Resources
Overview
Datasets
COVID-19-RNA-Seq-datasets
A repository for sharing information on available COVID-19 RNA-Seq datasets. COVID-19-RNA-Seq-datasets
Software
MetaOmGraph
MetaOmGraph is a java software for fully interactive analysis of big expression datasets. Read paper here. Download.
pyrpipe
pyrpipe is a python library to write RNA-Seq and other bioinformatics pipelines in pure python in an object-oriented manner. Read the pre-print here. Download.
orfipy
orfipy is a tool written in python to extract ORFs in an extremely fast and flexible manner. Read pre-print here. Download.
PLncPRO
PLncPRO is a python tool to predic long-non coding RNAs using random forest models. Read paper here. Download.
ORIS
ORIS is a java tool for interactive exploration of bacterial and archaeal genome. It provides multiple modules for identification of origin of replication sequences. Read paper here. Download.
csvtoxl
A java GUI application to convert or merge multiple gene lists from text/csv/tsv to xlsx format, without converting gene names to dates. Download.
Workshops
Data science with python and pandas
Python workshop material for data science with python and pandas. Data science with python and pandas
Introduction to python programming
Python workshop material for python programming workshop. Python workshop
Tutorials
pyrpipe tutorials
Multiple pipelines implemented in pyrpipe. pyrpipe tutorial
Working with TCGA data
Basic tutorial on accessing TCGA data using TCGABiolinks R package. TCGA-Data-Analysis.
Machine learning examples using H2O
Some examples using the H2O machine learning library. H2O machine learning examples